I have found that just sitting next to the cage and reading a book and every now and then looking there way and talking is a good way to it least get them use to you being by them. I also like to talk to them from a distance every now and then just so they know I am aware of them and a good person... ha, well it least hopefully. We bird sat some budgies years ago and they were obviously not use to people by them and would freak out like your conure does. We watched them for two weeks and they actually got use to my voice and became curious of me and did not mind me sitting on a chair next to the table that the cage sat on. Move very slowly by your boy and just give him eye contact the first days and a few times talk to him in a soft voice. Millet is a great thing to try to put next to the cage to see if he will eat it, or if he is like my daughters conure they also love people food. I do hope you new conure gets use to you soon so it will not freak out anymore.
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